VMD (Visual molecular dynamics) is a visualization computer program designed for modelling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. Most importantly, VMD can be used to view and analyze the results of a molecular dynamics (MD) simulation and can also act as graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer. It provides a huge variety of options for coloring and rendering a molecule.

 

Application/Keywords: Molecular Visualization, MD Trajectory Analysis.