SDA  7.1
Simulation of Diffusional Association
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mod_hydrodynamics Module Reference

Module Hydrodynamics.
Only contain function, state independent. More...

Collaboration diagram for mod_hydrodynamics:

Public Member Functions

subroutine scale_diffusion_coefficients (tab_protein, geom, cutoff_phi)
 Wrapper function.
 
subroutine scale_diffusion_coefficients_sdamm (tab_protein, geom, cutoff_phi)
 
subroutine scale_diffusion_coefficients_sda2prot (tab_protein, geom, cutoff_phi)
 
subroutine local_volume_fraction (prot2, dist2, cutoff_phi, vol_occ)
 compute volume fraction More...
 
subroutine local_trans_diff_scaling (dm_init, vol_occ, dm_scaled)
 Scale the translation diffusion coefficient according to.
 
subroutine local_rot_diff_scaling (dr_init, vol_occ, dr_scaled)
 Scale the rotational diffusion coefficient according to.
 

Detailed Description

Module Hydrodynamics.
Only contain function, state independent.

Member Function/Subroutine Documentation

subroutine mod_hydrodynamics::local_volume_fraction ( type ( protein )  prot2,
real ( kind=8 )  dist2,
real ( kind=8 )  cutoff_phi,
real ( kind=8 )  vol_occ 
)

compute volume fraction

Parameters
prot2: second solute
dist2: distance square
cutoff_phi: cutoff distance
vol_occ: return fraction of occupied volume

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The documentation for this module was generated from the following file: