accept (defined in change_conformation) | change_conformation | |
accepted_new_conf (defined in change_conformation) | change_conformation | |
array_energy (defined in change_conformation) | change_conformation | |
array_energy_1d (defined in change_conformation) | change_conformation | |
array_energy_sda2prot (defined in change_conformation) | change_conformation | |
array_energy_sda2prot_1d (defined in change_conformation) | change_conformation | |
array_energy_sdamm (defined in change_conformation) | change_conformation | |
bool_escape (defined in change_conformation) | change_conformation | |
change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) (defined in change_conformation) | change_conformation | |
change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) (defined in change_conformation) | change_conformation | |
change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) (defined in change_conformation) | change_conformation | |
check_reaction_pair(prot1, prot2, rcriteria, visited_windows, escape, sum_time, first_time, time, dtnow, close) (defined in change_conformation) | change_conformation | |
check_reaction_pair(prot1, prot2, rcriteria, visited_windows, escape, sum_time, first_time, time, dtnow, close) (defined in change_conformation) | change_conformation | |
check_reaction_pair_sdamm(tab_protein, set1, set2, rcriteria, geom, sum_time, dtnow, array_close, nclose, close) (defined in change_conformation) | change_conformation | |
clos1 (defined in change_conformation) | change_conformation | |
compute_rdf(resid_time, tab_protein, geom) (defined in change_conformation) | change_conformation | |
convert_to_record_format(array_energy, array_energy_1d, max_bit_energy) (defined in change_conformation) | change_conformation | |
correct_format_energy (defined in change_conformation) | change_conformation | |
current_conf (defined in change_conformation) | change_conformation | |
current_occur (defined in change_conformation) | change_conformation | |
current_run (defined in change_conformation) | change_conformation | |
current_step (defined in change_conformation) | change_conformation | |
cut2 (defined in change_conformation) | change_conformation | |
dist (defined in change_conformation) | change_conformation | |
dm (defined in change_conformation) | change_conformation | |
dm30 (defined in change_conformation) | change_conformation | |
dt (defined in change_conformation) | change_conformation | |
dtnow (defined in change_conformation) | change_conformation | |
dummy_array (defined in change_conformation) | change_conformation | |
dummy_array_protein (defined in change_conformation) | change_conformation | |
f (defined in change_conformation) | change_conformation | |
force (defined in change_conformation) | change_conformation | |
geom (defined in change_conformation) | change_conformation | |
global_steps_record (defined in change_conformation) | change_conformation | |
half_box (defined in change_conformation) | change_conformation | |
hit (defined in change_conformation) | change_conformation | |
i (defined in change_conformation) | change_conformation | |
ierr (defined in change_conformation) | change_conformation | |
iflex (defined in change_conformation) | change_conformation | |
init_time(param_timestep, geom, dist, rhit, dm30, dtnow, hit) (defined in change_conformation) | change_conformation | |
init_time(param_timestep, geom, dist, rhit, dm30, dtnow, hit) (defined in change_conformation) | change_conformation | |
io_err (defined in change_conformation) | change_conformation | |
j (defined in change_conformation) | change_conformation | |
k (defined in change_conformation) | change_conformation | |
local_escape (defined in change_conformation) | change_conformation | |
local_fpt (defined in change_conformation) | change_conformation | |
local_sumtime (defined in change_conformation) | change_conformation | |
local_visited_windows (defined in change_conformation) | change_conformation | |
make_bd_move_2prot(prot1, prot2, geom, force, torque, torque1, dtnow, dist, rhit, hit, accept, escape, total_overlap) (defined in change_conformation) | change_conformation | |
make_bd_move_sdamm(tab_prot, geom, nb_prot, force, torque, dt) (defined in change_conformation) | change_conformation | |
max_energy_terms (defined in change_conformation) | change_conformation | |
mrot (defined in change_conformation) | change_conformation | |
n_rdfs (defined in change_conformation) | change_conformation | |
n_repeat_occur (defined in change_conformation) | change_conformation | |
nb_overlap (defined in change_conformation) | change_conformation | |
nb_overlap_flex (defined in change_conformation) | change_conformation | |
nb_prot1 (defined in change_conformation) | change_conformation | |
nb_prot2 (defined in change_conformation) | change_conformation | |
nb_protein (defined in change_conformation) | change_conformation | |
nboost_all (defined in change_conformation) | change_conformation | |
nmax_overlap (defined in change_conformation) | change_conformation | |
nrun (defined in change_conformation) | change_conformation | |
nstep_all (defined in change_conformation) | change_conformation | |
o_complexes (defined in change_conformation) | change_conformation | |
o_complexes (defined in change_conformation) | change_conformation | |
option_omp (defined in change_conformation) | change_conformation | |
overlap (defined in change_conformation) | change_conformation | |
p_local_complexe (defined in change_conformation) | change_conformation | |
p_restart (defined in change_conformation) | change_conformation | |
p_tmp_onecomplexe (defined in change_conformation) | change_conformation | |
param_analytic (defined in change_conformation) | change_conformation | |
param_force_energy (defined in change_conformation) | change_conformation | |
param_metaldesolv (defined in change_conformation) | change_conformation | |
param_probe (defined in change_conformation) | change_conformation | |
param_timestep (defined in change_conformation) | change_conformation | |
pos_relat (defined in change_conformation) | change_conformation | |
print_step (defined in change_conformation) | change_conformation | |
print_step_compl (defined in change_conformation) | change_conformation | |
print_step_traj (defined in change_conformation) | change_conformation | |
protein1 (defined in change_conformation) | change_conformation | |
protein2 (defined in change_conformation) | change_conformation | |
ptab_protein (defined in change_conformation) | change_conformation | |
rboost (defined in change_conformation) | change_conformation | |
rcriteria (defined in change_conformation) | change_conformation | |
resid_time (defined in change_conformation) | change_conformation | |
rhit (defined in change_conformation) | change_conformation | |
run_done (defined in change_conformation) | change_conformation | |
size_array_energy (defined in change_conformation) | change_conformation | |
size_array_energy_sda2prot (defined in change_conformation) | change_conformation | |
size_array_energy_sda2prot_1d (defined in change_conformation) | change_conformation | |
status (defined in change_conformation) | change_conformation | |
steps_record (defined in change_conformation) | change_conformation | |
steps_str (defined in change_conformation) | change_conformation | |
t (defined in change_conformation) | change_conformation | |
t1 (defined in change_conformation) | change_conformation | |
tab_protein (defined in change_conformation) | change_conformation | |
tab_protein (defined in change_conformation) | change_conformation | |
tab_protein_unique (defined in change_conformation) | change_conformation | |
time (defined in change_conformation) | change_conformation | |
time_all (defined in change_conformation) | change_conformation | |
time_per_run (defined in change_conformation) | change_conformation | |
timehit (defined in change_conformation) | change_conformation | |
timemax (defined in change_conformation) | change_conformation | |
timer_bd (defined in change_conformation) | change_conformation | |
timer_complexes (defined in change_conformation) | change_conformation | |
timer_energy (defined in change_conformation) | change_conformation | |
timer_exchk (defined in change_conformation) | change_conformation | |
timer_flex (defined in change_conformation) | change_conformation | |
timer_force (defined in change_conformation) | change_conformation | |
timer_rdf (defined in change_conformation) | change_conformation | |
timer_reactpair (defined in change_conformation) | change_conformation | |
timer_record (defined in change_conformation) | change_conformation | |
timer_update_rate (defined in change_conformation) | change_conformation | |
torque (defined in change_conformation) | change_conformation | |
total_accepted_new_conf (defined in change_conformation) | change_conformation | |
total_energy (defined in change_conformation) | change_conformation | |
total_occur (defined in change_conformation) | change_conformation | |
total_overlap (defined in change_conformation) | change_conformation | |
total_overlap_flex (defined in change_conformation) | change_conformation | |
total_test_change_conformation (defined in change_conformation) | change_conformation | |
trajectories (defined in change_conformation) | change_conformation | |
trajectories (defined in change_conformation) | change_conformation | |
type_calc (defined in change_conformation) | change_conformation | |