SDA  7.1
Simulation of Diffusional Association
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change_conformation Member List

This is the complete list of members for change_conformation, including all inherited members.

accept (defined in change_conformation)change_conformation
accepted_new_conf (defined in change_conformation)change_conformation
array_energy (defined in change_conformation)change_conformation
array_energy_1d (defined in change_conformation)change_conformation
array_energy_sda2prot (defined in change_conformation)change_conformation
array_energy_sda2prot_1d (defined in change_conformation)change_conformation
array_energy_sdamm (defined in change_conformation)change_conformation
bool_escape (defined in change_conformation)change_conformation
change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) (defined in change_conformation)change_conformation
change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) (defined in change_conformation)change_conformation
change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) (defined in change_conformation)change_conformation
check_reaction_pair(prot1, prot2, rcriteria, visited_windows, escape, sum_time, first_time, time, dtnow, close) (defined in change_conformation)change_conformation
check_reaction_pair(prot1, prot2, rcriteria, visited_windows, escape, sum_time, first_time, time, dtnow, close) (defined in change_conformation)change_conformation
check_reaction_pair_sdamm(tab_protein, set1, set2, rcriteria, geom, sum_time, dtnow, array_close, nclose, close) (defined in change_conformation)change_conformation
clos1 (defined in change_conformation)change_conformation
compute_rdf(resid_time, tab_protein, geom) (defined in change_conformation)change_conformation
convert_to_record_format(array_energy, array_energy_1d, max_bit_energy) (defined in change_conformation)change_conformation
correct_format_energy (defined in change_conformation)change_conformation
current_conf (defined in change_conformation)change_conformation
current_occur (defined in change_conformation)change_conformation
current_run (defined in change_conformation)change_conformation
current_step (defined in change_conformation)change_conformation
cut2 (defined in change_conformation)change_conformation
dist (defined in change_conformation)change_conformation
dm (defined in change_conformation)change_conformation
dm30 (defined in change_conformation)change_conformation
dt (defined in change_conformation)change_conformation
dtnow (defined in change_conformation)change_conformation
dummy_array (defined in change_conformation)change_conformation
dummy_array_protein (defined in change_conformation)change_conformation
f (defined in change_conformation)change_conformation
force (defined in change_conformation)change_conformation
geom (defined in change_conformation)change_conformation
global_steps_record (defined in change_conformation)change_conformation
half_box (defined in change_conformation)change_conformation
hit (defined in change_conformation)change_conformation
i (defined in change_conformation)change_conformation
ierr (defined in change_conformation)change_conformation
iflex (defined in change_conformation)change_conformation
init_time(param_timestep, geom, dist, rhit, dm30, dtnow, hit) (defined in change_conformation)change_conformation
init_time(param_timestep, geom, dist, rhit, dm30, dtnow, hit) (defined in change_conformation)change_conformation
io_err (defined in change_conformation)change_conformation
j (defined in change_conformation)change_conformation
k (defined in change_conformation)change_conformation
local_escape (defined in change_conformation)change_conformation
local_fpt (defined in change_conformation)change_conformation
local_sumtime (defined in change_conformation)change_conformation
local_visited_windows (defined in change_conformation)change_conformation
make_bd_move_2prot(prot1, prot2, geom, force, torque, torque1, dtnow, dist, rhit, hit, accept, escape, total_overlap) (defined in change_conformation)change_conformation
make_bd_move_sdamm(tab_prot, geom, nb_prot, force, torque, dt) (defined in change_conformation)change_conformation
max_energy_terms (defined in change_conformation)change_conformation
mrot (defined in change_conformation)change_conformation
n_rdfs (defined in change_conformation)change_conformation
n_repeat_occur (defined in change_conformation)change_conformation
nb_overlap (defined in change_conformation)change_conformation
nb_overlap_flex (defined in change_conformation)change_conformation
nb_prot1 (defined in change_conformation)change_conformation
nb_prot2 (defined in change_conformation)change_conformation
nb_protein (defined in change_conformation)change_conformation
nboost_all (defined in change_conformation)change_conformation
nmax_overlap (defined in change_conformation)change_conformation
nrun (defined in change_conformation)change_conformation
nstep_all (defined in change_conformation)change_conformation
o_complexes (defined in change_conformation)change_conformation
o_complexes (defined in change_conformation)change_conformation
option_omp (defined in change_conformation)change_conformation
overlap (defined in change_conformation)change_conformation
p_local_complexe (defined in change_conformation)change_conformation
p_restart (defined in change_conformation)change_conformation
p_tmp_onecomplexe (defined in change_conformation)change_conformation
param_analytic (defined in change_conformation)change_conformation
param_force_energy (defined in change_conformation)change_conformation
param_metaldesolv (defined in change_conformation)change_conformation
param_probe (defined in change_conformation)change_conformation
param_timestep (defined in change_conformation)change_conformation
pos_relat (defined in change_conformation)change_conformation
print_step (defined in change_conformation)change_conformation
print_step_compl (defined in change_conformation)change_conformation
print_step_traj (defined in change_conformation)change_conformation
protein1 (defined in change_conformation)change_conformation
protein2 (defined in change_conformation)change_conformation
ptab_protein (defined in change_conformation)change_conformation
rboost (defined in change_conformation)change_conformation
rcriteria (defined in change_conformation)change_conformation
resid_time (defined in change_conformation)change_conformation
rhit (defined in change_conformation)change_conformation
run_done (defined in change_conformation)change_conformation
size_array_energy (defined in change_conformation)change_conformation
size_array_energy_sda2prot (defined in change_conformation)change_conformation
size_array_energy_sda2prot_1d (defined in change_conformation)change_conformation
status (defined in change_conformation)change_conformation
steps_record (defined in change_conformation)change_conformation
steps_str (defined in change_conformation)change_conformation
t (defined in change_conformation)change_conformation
t1 (defined in change_conformation)change_conformation
tab_protein (defined in change_conformation)change_conformation
tab_protein (defined in change_conformation)change_conformation
tab_protein_unique (defined in change_conformation)change_conformation
time (defined in change_conformation)change_conformation
time_all (defined in change_conformation)change_conformation
time_per_run (defined in change_conformation)change_conformation
timehit (defined in change_conformation)change_conformation
timemax (defined in change_conformation)change_conformation
timer_bd (defined in change_conformation)change_conformation
timer_complexes (defined in change_conformation)change_conformation
timer_energy (defined in change_conformation)change_conformation
timer_exchk (defined in change_conformation)change_conformation
timer_flex (defined in change_conformation)change_conformation
timer_force (defined in change_conformation)change_conformation
timer_rdf (defined in change_conformation)change_conformation
timer_reactpair (defined in change_conformation)change_conformation
timer_record (defined in change_conformation)change_conformation
timer_update_rate (defined in change_conformation)change_conformation
torque (defined in change_conformation)change_conformation
total_accepted_new_conf (defined in change_conformation)change_conformation
total_energy (defined in change_conformation)change_conformation
total_occur (defined in change_conformation)change_conformation
total_overlap (defined in change_conformation)change_conformation
total_overlap_flex (defined in change_conformation)change_conformation
total_test_change_conformation (defined in change_conformation)change_conformation
trajectories (defined in change_conformation)change_conformation
trajectories (defined in change_conformation)change_conformation
type_calc (defined in change_conformation)change_conformation