SDA  7.1
Simulation of Diffusional Association
 All Classes Files Functions Variables Groups Pages
List of all members
mod_flexibility::flexible Type Reference

Main class owned by each protein to allow a change in conformation. More...

Collaboration diagram for mod_flexibility::flexible:

Public Attributes

type(list_flex_type), pointer plist_flex
 pointer to list
 
integer current_conf
 save value of the current conformation for each protein. very convenient for sdamm and reading restart file
 
type(nodeflex), pointer p_current_node
 current node
 
real(kind=4), dimension(:),
allocatable 
visited_conf
 for statistics, sum up the number of visited conformations increments the time spend in each conformation
 
real(kind=4) time_next_flex
 Time resting for the next change to an other conformation
sdamm needs asynchrone changes every protein needs its own time ( kind of gillepsie algorithm )
set to time_next_flex (+random_freq) and decrease until < 0.
 

Detailed Description

Main class owned by each protein to allow a change in conformation.

Every flexible protein has a pointer to flexible.
it contains the list list_flex_type
and additional convenient variable : current_node, current_conf Manage statistics for each protein : visited_conf, could extend statistics


The documentation for this type was generated from the following file: