SDA
7.1
Simulation of Diffusional Association
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- a -
add_nbpar() :
utils.f90
- b -
bd_rotation() :
bd_move.f90
bd_rotation_simple() :
bd_move.f90
bd_translation() :
bd_move.f90
boost() :
bd_move.f90
- c -
change_conformation() :
change_conformation.f90
check_exclusion() :
check_exclusion.f90
check_reaction_pair() :
check_reaction_pair.f90
check_reaction_pair_sdamm() :
check_reaction_pair.f90
check_timestep() :
init_time.f90
compute_dist_pbc() :
compute_distance.f90
compute_distance() :
compute_distance.f90
compute_distance_criteria_v2() :
compute_distance.f90
compute_distance_test() :
compute_distance.f90
compute_pmf() :
MainLoop_sda_pmf.f90
compute_rdf() :
MainLoop_sdamm.f90
convert_to_record_format() :
MainLoop_sda_2proteins_omp.f90
create_filename() :
utils.f90
create_filename_flex() :
utils.f90
create_filename_new() :
utils.f90
- e -
eschk() :
eschk.f90
extend_1darray_float() :
utils.f90
extend_array_double() :
utils.f90
extract_key() :
read_group_file.f90
- g -
get_atoms_min_dist() :
compute_distance.f90
ggnml_thread_safe() :
maths_thread_safe.f90
ggubs_thread_safe() :
maths_thread_safe.f90
- i -
init_time() :
init_time.f90
initialize_bits() :
read_input_file.f90
initialize_movable_atoms() :
read_input_file.f90
initialize_random_generator() :
read_input_file.f90
- l -
least_square() :
maths.f
least_square2() :
maths.f
- m -
main() :
main.f90
mainloop_sda_2proteins() :
MainLoop_sda_2proteins.f90
mainloop_sda_2proteins_omp() :
MainLoop_sda_2proteins_omp.f90
mainloop_sda_energy() :
MainLoop_sda_energy.f90
mainloop_sda_pmf() :
MainLoop_sda_pmf.f90
mainloop_sdamm() :
MainLoop_sdamm.f90
make_bd_move_2prot() :
make_bd_move_2prot.f90
make_bd_move_2prot_timer_excl() :
make_bd_move_2prot_timer_excl.f90
make_bd_move_sdamm() :
make_bd_move_sdamm.f90
make_exclusion_grid() :
make_exclusion_grid.f90
modify_fname_implicit() :
utils.f90
- p -
prepare_atom_protein() :
prepare_atom_protein.f90
prepare_grid() :
prepare_grid.f90
print_logo() :
main.f90
- r -
read_array_char() :
read_group_file.f90
read_char() :
read_group_file.f90
read_eff_charges() :
read_eff_charges.f90
read_group() :
read_group_file.f90
read_input_file() :
read_input_file.f90
read_list_conf() :
read_input_file.f90
read_pdb() :
read_pdb.f90
read_restart() :
restart.f90
read_single_parameter() :
read_group_file.f90
restart_origin_conf() :
restart.f90
rotation_pmf_sda6() :
MainLoop_sda_pmf.f90
rotation_z1x2z3() :
MainLoop_sda_pmf.f90
rotation_z1y2x3_tbryan() :
MainLoop_sda_pmf.f90
- s -
simple_derivative() :
maths.f
solva() :
solva.f90
,
solva_naccess.f90
- w -
write_restart() :
restart.f90
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